PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.B0G5C
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 267aa    MW: 29801.2 Da    PI: 5.8708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.B0G5CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05241264123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y C+dC++ F++ + L++H +  H
  Aradu.B0G5C 241 YGCKDCNRLFKTEDALNSHNKAkH 264
                  67*****************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.7E-6241265IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.365241267IPR007087Zinc finger, C2H2
PROSITE patternPS000280243264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEFWGVEVKS GETLEVDPGY GKMIHLSMAC LGEVKKDKGE PVTVYVKFGD QRLVIGTLTS  60
ENFPQISYDL IFEKEFELSH NWKNGKFEDI PVAAANGNSE LEVKNAVKLD ANEAKQKEKI  120
GDPRKKEKAN EKDANGEDEE DSSDADSDES DEDSSEDEVF LTHTKRMDHD AHAELSKKRV  180
HESSKKTPVP EKKAKFVTPE KIDNKGGVHV ATPYPTKQAI KAAANNRQPV KQQTPKLVGD  240
YGCKDCNRLF KTEDALNSHN KAKHSAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114125KQKEKIGDPRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016208108.11e-155PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBLI3T5973e-99I3T597_LOTJA; Uncharacterized protein
STRINGGLYMA03G34850.38e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-31histone deacetylase 3